PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1150
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 446aa    MW: 49559 Da    PI: 9.4439
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1150genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05101123123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C++C+k F r  nL+ H r H
  Gh_A11G1150 101 FICEICNKGFQRDQNLQLHRRGH 123
                  89*******************88 PP

2zf-C2H212.40.00049177199123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H +t+
  Gh_A11G1150 177 WKCEKCSKIYAVQSDWKAHSKTC 199
                  58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-5100123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.02E-6100123No hitNo description
PfamPF121715.2E-5101123IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.022101123IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.845101123IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
SMARTSM00355260142172IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4165198IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.02E-6172197No hitNo description
SMARTSM00355170177197IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MFPAATMSSS TSLSEEANVS SGTRVQDFGG LNPIVTHQQL PQKIKKKRSL PGNPGTTFFL  60
SLPVFLFRLH VLVFNSFYSI TDPDAEVIAL SPKTLLATNR FICEICNKGF QRDQNLQLHR  120
RGHNLPWKLK QRNSKEVKKK AYVCPEPTCV HHHPSRALGD LTGIKKHYCR KHGEKKWKCE  180
KCSKIYAVQS DWKAHSKTCG TREYRCDCGT LFSRKDSFIT HRAFCDALAE ESARLSANQL  240
AAAANPALNP SSLFPFQNPW DPIQTSNPNP NGPLQVKPES HHLTPYFQEL PLPPPKALFT  300
SPFQSLHVSN NPPSNAAATS ATPQLSATAL LQKATTAGAT ATQIKNNNYY YSMATHLYPD  360
FSGFTAADLA TWQKSSDRFT RDFLGLTRDN QGGNGNVNLS MNPRDVLSYT GGVELQHFER  420
GQPLLRPQGF GFPEPYAATS ETWGDC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.93930.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4617241e-134AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490609.10.0PREDICTED: protein indeterminate-domain 12-like
SwissprotO227591e-124IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A0D2SJN70.0A0A0D2SJN7_G
STRINGPOPTR_0002s04880.11e-176(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-105indeterminate(ID)-domain 12